PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00401.1_g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 415aa    MW: 47373.4 Da    PI: 10.0285
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00401.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP45.21.5e-1442843771
                  E2F_TDP 37 e..........dvknkrRRiYDilNVLealnliekkekneirwkg 71
                                         v  +rRRiYDi+N+Le+++++++k+kn++rw+g
  Sme2.5_00401.1_g00018.1 42 WkeagvhtkdrGV--ERRRIYDIVNILESIGVLSRKAKNQYRWNG 84
                             3445555553345..9***************************98 PP

2E2F_TDP70.81.6e-22141220170
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                              rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ +      +k+k RR+YDi+NV+ ++nliek     + k+ +rw+
  Sme2.5_00401.1_g00018.1 141 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDvhdlmAMKTKTRRLYDIANVFISMNLIEKirspdNGKPVFRWI 220
                              79****************************************************************99999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.4E-82784IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-133384IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-94885IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-135185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-18138221IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-22141221IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-17142220IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.18E-10143220IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGFYNSFKLI KPYTHHLWRI FLSLKGISWI IPRKVAEALL CWKEAGVHTK DRGVERRRIY  60
DIVNILESIG VLSRKAKNQY RWNGYSAIPK AVDLLKKEGL KDLPSVSSTC HNVSNVIACN  120
HSDVEEKGEG KSSGSHKIDN RKEKSLMILA QNFVKLFHCS DVDLISLDKA ASALLGDVHD  180
LMAMKTKTRR LYDIANVFIS MNLIEKIRSP DNGKPVFRWI AWKENPRSGS PAAAKSDDST  240
RRTFGAEITN IIPKRCRDDS SSDLMSNGQV KRLRVTKDNE LKDKKPEMSA EQLNERGTKD  300
FVFGPFGPSS LPRSGVSGKE KLKQIQNWED LASKYHPRYQ NKAASELFAH YVEAWESWQF  360
PVLSDEFRAW VHRRQSISPT CLNLSYYKWQ MPAAIAMYQC FSSSLLFKPL EAIPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-244020732222Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154131e-171AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence.
GenBankHG9755141e-171HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232256.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLK4BBN80.0K4BBN8_SOLLC; Uncharacterized protein
STRINGSolyc02g087310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.14e-73DP-E2F-like protein 3